The pedals do not line up; it was like that from the factory. The only reason any of the pedals would be even closer to the ground is if the arm is bent. I believe there is approxamately a 1/2" offset between the gas and brake pedals.
If it isn't bent and you floor it and the throttle plate doesn't open 100% then you may need to remove slack from the throttle cable (there is supposed to be a little, but not much) or you may need to adjust the linkage which mounts between it and the throttle body.
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